Installation

Operating system

Installation and testing of DNAvi has been performed for Windows 10 and Ubuntu 14.04.2 LTS.

Suitable systems:
Windows 10 Pro, Version 22H2        with Python 3.12.0 and Python 3.13
Ubuntu 24.04.2 LTS                  with Python 3.13.5

Dependencies

Please make sure you have installed python => 3.13. Download Python.

python --version
>> Python 3.13.5

Install through pip (recommended)

You need python 3.12 or higher.

pip install dnavi

Test if the installation worked

dnavi --version

 Welcome to
       ____  _   _    _        _
      |  _ |  \ | |  / \__   _(_)
      | | | |  \| | / _ \ \ / / |
      | |_| | |\  |/ ___ \ V /| |
      |____/|_| \_/_/   \_\_/ |_|

 v0.0.0.1

Nice! You are ready to use DNAvi. Go to Quickstart to try an example!

Step-by-step (alternative)

First download the required packages …

Option 1: Through pip.

Note: the first time running DNAvi may take a bit longer due to matplotlib configuring

pip install numpy pandas seaborn scipy matplotlib imageio scikit-image werkzeug scikit-posthocs

Option 2 (preferred): Through conda. Install Conda.

Tested on x64 Windows 10 Pro, Version 22H2 with Python 3.13.
Tested on x64 Ubuntu 24.04.2 LTS, with Python 3.13.5
Note: After installing and initiating conda, a restart is required.

conda create --name dnavi numpy pandas seaborn scipy matplotlib imageio werkzeug scikit-image -y
conda activate dnavi
conda install conda-forge::scikit-posthocs -y

Install DNAvi

Next, download the repository.

Use github CLI:

gh repo clone anjahess/DNAvi

Or wget:

wget https://github.com/anjahess/DNAvi/archive/refs/heads/main.zip

Unpack or move the DNAvi folder to your location of choice and you’re ready to start.

Test if the installation worked

Go to DNAvi and call DNAvi.py to confirm it has been installed successfully:

cd /path/to/DNAvi
python3 DNAvi.py --version

 Welcome to
       ____  _   _    _        _
      |  _ |  \ | |  / \__   _(_)
      | | | |  \| | / _ \ \ / / |
      | |_| | |\  |/ ___ \ V /| |
      |____/|_| \_/_/   \_\_/ |_|

 v0.0.0.1

Nice! You are ready to use DNAvi. Go to Quickstart to try an example!