Index

A

ACCEPTED_FORMATS (in module constants) ALTERNATE_FORMAT (in module constants) analyze_electrophero module

analyze_gel module analyze_gel() (in module analyze_gel) ARTIFICIAL_MAX (in module constants)

B

BACKGROUND_SUBSTRACTION_STATS (in module constants)

C

check_config() (in module data_checks) check_file() (in module data_checks) check_input() (in module data_checks) check_interval() (in module data_checks) check_ladder() (in module data_checks)

check_marker_lane() (in module data_checks) check_meta() (in module data_checks) check_name() (in module data_checks) compute_nuc_intervals() (in module data_checks) constants module

D

data_checks module

detect_delim() (in module data_checks) DISTANCE (in module constants) distribution_stats() (in module utils)

E

epg_analysis() (in module analyze_electrophero)

epg_stats() (in module analyze_electrophero)

G

generate_meta_dict() (in module data_checks)

gridplot() (in module plotting)

H

HALO_FACTOR (in module constants)

I

integrate() (in module utils)

INTERPOLATE_FUNCTION (in module constants)

L

LADDER_DICT (in module constants) ladderplot() (in module plotting)

lineplot() (in module plotting) LOGFILE_NAME (in module constants)

M

maindir (in module analyze_electrophero) marker_and_normalize() (in module analyze_electrophero) MAX_PEAK_WIDTH_FACTOR (in module constants) mean_from_histogram() (in module utils) merge_tables() (in module utils) MIN_PEAK_HEIGHT_FACTOR (in module constants)

module analyze_electrophero analyze_gel constants data_checks plotting utils

N

normality() (in module utils) NUC_DICT (in module constants)

NUC_DICT_250 (in module constants) nuc_fractions() (in module analyze_electrophero)

P

p2stars() (in module plotting) PALETTE (in module constants) parse_meta_to_long() (in module analyze_electrophero) peak2basepairs() (in module analyze_electrophero)

PEAK_PROMINENCE (in module constants) peakplot() (in module plotting) plotting module

R

range_intersect() (in module analyze_gel) remove_colors_from_img() (in module analyze_gel)

remove_marker_from_df() (in module analyze_electrophero) resize_img() (in module analyze_gel) run_stats() (in module analyze_electrophero)

S

script_path (in module analyze_electrophero)

split_and_long_by_ladder() (in module analyze_electrophero) stats_plot() (in module plotting)

U

utils module

V

vartest() (in module utils)

W

wide_to_long() (in module utils)

X

XCOL (in module constants)

XLABEL (in module constants) XLABEL_PRIOR_SIZE (in module constants)

Y

YCOL (in module constants)

YLABEL (in module constants)